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PUBLICATIONS

““The woods are lovely, dark and deep, But I have promises to keep, And miles to go before I sleep, And miles to go before I sleep.”

-Robert Frost-

FIRST-AUTHORED PUBLICATIONS

  1. Misra, B.B., 2019. Data Normalization Strategies in Metabolomics: Current Challenges, Approaches, and Tools European Journal of Mass Spectrometry, Review

  2. Misra, B.B., Olivier, M., 2020. High Resolution GC-Orbitrap-MS Metabolomics using both Electron Ionization (EI) and Chemical Ionization (CI) for Analysis of Human Plasma. Journal of Proteomics Research [Link]

  3. Misra, B.B., Misra, A., 2019. The Chemical Exposome of Type 2 Diabetes Mellitus: Opportunities and Challenges in the Omics Era Diabetes & Metabolic Syndrome: Clinical Research & Reviews, Review  [Link]

  4. Misra, B.B., 2019.The Connection and Disconnection Between Microbiome and Metabolome: A Critical Appraisal in Clinical Research. Biological research for Nursing, Review [Link]

  5. Misra, B.B., Bassey, E., Olivier, M. 2019. Comparison of a GC-Orbitrap-MS with Parallel GC-FID Capabilities for Metabolomics of Human Serum. BioRxiv [Link]

  6. Misra, B.B., Yang, Y., Liang, L., Bi, D., Weng, W., Wu, W., Cai, S., Qin, H., Goel, A., Li, X., Ma, Y., 2019. Integrated microbiome and metabolome analysis reveals the novel interplay between commensal bacteria and metabolites in colorectal cancer. Theranostics [Link]

  7. Misra, B. B., 2019. Metabolomics tools to study links between pollution and human health: An exposomics perspective. Current Pollution Reports Review [Link]

  8. Misra, B.B., 2019. Individualized Metabolomics: Opportunities and Challenges. Clinical Chemistry and Laboratory Medicine Opinion Article [Link]

  9. Misra, B.B., Mattern, V., Upadhayay, R.P., Comuzzie, A.G., Parks, J.S., Olivier, M., Cox, L.A. 2019, Metabolic Reprogramming: Short-term Western Diet exposure induces sustained changes in plasma metabolites. bioRxiv [Link]

  10. Misra, B.B., Puppala, S., Comuzzie, A.G., Mahaney, M.C., VandeBerg, J.L., Olivier, M., Cox, L.A., 2019, Analysis of Serum Changes in Response to a High Fat High Cholesterol Diet Challenge Reveals Metabolic Biomarkers of Atherosclerosis. PLoS One [Link]

  11. Misra, B.B., Bolio, G.I.H., Hernandez, R.M.I, Hernandez, E., Colli Dula, R.C., 2019, 1H-NMR metabolomic analysis of skin and blubber of bottlenose dolphins reveals a functional metabolic dichotomy. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. [Link]

  12. Misra, B.B.,Mohapatra, S., 2018. Tools and Resources for Metabolomics Research Community: A 2017-2018 update. Electrophoresis Review Article [Link]

  13. Misra, B.B., Reichman, S.M., Chen, S. 2018. The guard cell ionome: Understanding the role of ions in guard cell functions. Progress in Biophysics and Molecular Biology Review Article [Link]

  14. Misra, B.B., Ekong, B., Bishop, A., Kusel, D.T., Cox, L.A., Olivier, M., 2018, High resolution GC/MS metabolomics of non-human primate serum, Rapid Communications in Mass Spectrometry [Link]

  15. Misra, B.B., Langefeld, C., Olivier, M., Cox, L.A., 2018 Integrated Omics: Tools, Advances, and Future Approaches. Journal of Molecular Endocrinology Review Article [Link]

  16. Misra, B.B., Upadhayay, R.P., Cox, L.A., Olivier, M. 2018, Optimized GC-MS metabolomics for the analysis of kidney metabolites, Metabolomics [Link]

  17. Misra, B.B.,2018. Updates on Resources, Software Tools, and Databases for Plant Proteomics in 2016–2017, Electrophoresis Review Article [Link]

  18. Misra, B.B., 2018. New Tools and Resources in Metabolomics: 2016-2017, Electrophoresis Review Article [Link]

  19. Misra, B.B., 2017. Standards for Reporting Metabolomics Data in Phytomedicine Research. Open Science Framework. OSF PrePrints Opinion Piece [Link]

  20. Misra, B.B., Fahrmann, J., Grapov, D. 2017. Review of emerging metabolomic tools and resources: 2015-2016, Electrophoresis Review Article [Link]

  21. Misra, B.B., 2016. Cataloging the Brassica napus seed metabolome. Cogent Food & Agriculture Review Article [Link]

  22. Misra, B.B.,deArmas, E., Chen, S. 2016. Differential metabolomic responses of PAMP-triggered immunity and effector-triggered immunity in Arabidopsis suspension cells. Metabolomics [Link]

  23. Misra, B.B., 2016. The black-box of plant apoplast lipidomes. Frontier in Plant Science. Opinion Article [Link]

  24. Misra, B.B., 2016. Plant volatilome resources. Current Metabolomics. Highlight Article [Link]

  25. Misra, B.B., 2016. Quick tips to perform a metabolomics study. PeerJ Preprints PrePrint [Link]

  26. Misra, B.B., Yin, Z., Geng, S., deArmas, E., Chen, S. 2016. Metabolomic responses of Arabidopsis suspension cells to bicarbonate under light and dark conditions. Nature Scientific Reports 6 [Link]

  27. Misra, B.B., Acharya, B. R., Granot, D. M., Assmann, S. M., Chen, S., 2015. The guard cell metabolome: Functions in stomatal movement and global food security. Frontiers in Plant Science Review Article [Link]

  28. Misra, B.B., Chen, S. 2015. Advances in understanding CO2 responsive plant metabolomes in the era of climate change. Metabolomics Review Article [Link]

  29. Misra, B.B., & van der Hooft, J. J. 2015. Updates in Metabolomics Tools and Resources: 2014-2015. Electrophoresis Review Article [Link]

  30. Misra, B.B., & Chaturvedi, R. 2015. When plants brace for the emerging pathogens. Physiological and Molecular Plant Pathology Mini Review Article [Link]

  31. Misra, B.B., 2015. Molecular evolution and functional divergence of Chitinase gene family in Hevea brasiliensis genome. The Winnower [Link]

  32. Misra, B.B., deArmas, E., Tong, Z., Chen, S. 2015. Metabolomic responses of guard cells and mesophyll cells to CO2 enrichment. PLOS One [Link]

  33. Misra, B.B., 2014. An updated snapshot of recent advances in transcriptomics and genomics of phytomedicinals. Postdoc Journal Review Article [Link]

  34. Misra, B.B., & Dey, S. 2014. Immunolocalization of α-santalol in sandalwood. Journal of Essential Oil Research [Link]

  35. Misra, B.B., Assmann, S. M., & Chen, S. 2014. Plant single cell and single cell-type metabolomics. Trends in Plant Science. Feature Review Article [Link]

  36. Rahman A.Y.A., Usharraj A.O., Misra, B.B., et. al., 2013. Draft genome sequence of the rubber tree Hevea brasiliensis. BMC Genomics [co-first author; Cited 180 times] [Link]

  37. Misra, B.B., & Dey, S. 2013. Quantitative and qualitative evaluation of sesquiterpenoids from essential oil and in vitro somatic embryos of East Indian sandalwood (Santalum album L.) tree by HPTLC and GC methods. Open Access Journal of Medicinal and Aromatic Plants [Link]

  38. Misra, B.B., & Dey, S. 2013. Biological activities of East Indian sandalwood tree, Santalum album. PeerJ PrePrints. Review Article [Link]

  39. Misra, B.B., & Dey, S. 2013. Evaluation of in vivo anti-hyperglycemic and antioxidant potentials of α-santalol and sandalwood oil. Phytomedicine [Link]

  40. Misra, B.B., & Dey, S. 2013. Developmental variations in sesquiterpenoid biosynthesis in East Indian sandalwood tree (Santalum album L.). Trees- Structure and Function [Link]

  41. Misra, B.B., & Dey, S. 2013. TLC-bioautographic evaluation of in vitro anti-tyrosinase and anti-cholinesterase potentials of sandalwood oil. Natural Product Communications [Link]

  42. Misra, B.B., & Dey, S. 2013. Shikimic acid (Tamiflu precursor) production in suspension cultures of East Indian sandalwood (Santalum album L.) in air-lift bioreactor. Postdoc Journal [Link]

  43. Misra, B.B., & Dey, S. 2013. Accumulation patterns of phenylpropanoids and related enzymes in East Indian sandalwood tree undergoing developmental progression in vitro. Australian Journal of Crop Science [Link]

  44. Misra, B.B., & Dey, S. 2013. Culture of East Indian Sandalwood tree somatic embryos in air-lift bioreactors for production of santalols, phenolics and arabinogalactan proteins. AoB PLANTS [Link]

  45. Misra, B.B., Das, S.S. & Dey, S. 2013. Volatile profiling from heartwood of East Indian sandalwood tree. Journal of Pharmacy Research [Link]

  46. Misra, B.B., & Dey, S. 2012. Differential extraction and GC-MS based quantification of sesquiterpenoids from immature heartwood of East Indian sandalwood tree. Journal of Natural Sciences Research [Link]

  47. Misra, B.B., & Dey, S. 2012. Phytochemical analyses and evaluation of antioxidant efficacy of in vitro callus extract of East Indian sandalwood (Santalum album L.). Journal of Pharmacognosy and Phytochemisty [Link]

  48. Misra, B.B., & Dey, S. 2012. Comparative phytochemical analysis and antibacterial efficacy of in vitro and in vivo extracts from East Indian sandalwood tree (Santalum album L.). Letters in Applied Microbiology [Link]

 

                     CO-AUTHORED PUBLICATIONS

  1.  O'Shea, K., Misra, B.B., 2020. Software Tools, Databases and Resources in Metabolomics: Updates from 2018-2019, Metabolomics, Review [Link]

  2. Aksenov AA, Laponogov I, Zhang Z, Doran SL, Belluomo I, Veselkov D, Bittremieux W, Nothias LF, Nothias-Esposito M, Maloney KN, Misra BB, Melnik AV, Jones KL, Dorrestein K, Panitchpakdi M, Ernst M, van der Hooft JJ, Gonzalez M, Carazzone C, Amézquita A, Callewaert C, Morton J, Quinn R, Bouslimani A, Albarracín Orio A, Petras D, Smania AM, Couvillion SP, Burnet MC, Nicora CD, Zink E, Metz TO, Artaev V, Humston-Fulmer E, Gregor R, Meijler MM, Mizrahi I, Eyal S, Anderson B, Dutton R, Lugan R, Boulch PL, Guitton Y, Prevost S, Poirier A, Dervilly G, Bizec BL, Fait A, Persi NS, Song C, Gashu K, Coras R, Guma M, Manasson J, Scher JU, Barupal D, Alseekh S, Fernie A, Mirnezami R, Vasiliou V, Schmid R, Borisov RS, Kulikova LN, Knight R, Wang M, Hanna GB, Dorrestein PC, Veselkov K. . bioRxiv 2020.01.13.905091; doi: https://doi.org/10.1101/2020.01.13.905091 [Link]

  3. Kessler, M.D., Loesch, D.P., Perry, J.A., Heard-Costa, N.L., Taliun, D., Cade, B.E., Wang, H., Daya, M., Ziniti, J., Datta, S. and Celedón, J.C., Manuel E. Soto-Quiros, Lydiana Avila, Scott T. Weiss, Kathleen Barnes, Susan S. Redline, Ramachandran S. Vasan, Andrew D. Johnson, Rasika A. Mathias, Ryan Hernandez, James G. Wilson, Deborah A. Nickerson, Goncalo Abecasis, Sharon R. Browning, Sebastian Zöllner, Jeffrey R. O’Connell, Braxton D. Mitchell, National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine (TOPMed) Consortium (Misra, B. B.,), TOPMed Population Genetics Working Group, Timothy D. O’Connor, 2020. De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population. Proceedings of the National Academy of Sciences (PNAS)  201902766 [Link]

  4. Kumar, A., Misra, B.B., 2019. Challenges and Opportunities in Cancer Metabolomics. Proteomics. Opinion Article [Link]

  5. Parida, B.P., Misra, B.B.,  Mishra, A.N. 2018. Visual gene-network analysis of aging specific gene co-expression in human indicates overlaps with immuno-pathological regulations. 4Open-EDP Sciences [Link]

  6. Pontes, M.S., Montefusco-Pereira, C.V., Misra, B.B., Ribeiro-Junior, H.L., Graciano, D.E., Santos, J.D., Nobrega, M.A.S., Fernandes, S.S.L., Caires, A., Santiago, E.F., 2018, High-throughput phenotyping by applying digital morphometrics and fluorescence induction curves in seeds to identifying variations: a case study of three Annona (Annonaceae) species. Information Processing in Agriculture [Link]

  7. O'Shea, K., Kattupalli, D., Beckmann, M., Mur, L.A.J., Hardy, N.W., Misra, B.B., Lu, C., 2018. DIMEdb: an integrated database and web service for the identification of metabolites in direct infusion metabolomics, bioRxiv PrePrint [Link]

  8. Bishop, A.C., Libardoni, M., Choudary, A., Misra, B.B., Lange, K., Bernal, J., Nijland, M., Li, C., Olivier, M., Nathanielsz, P., Cox, L.A. 2018. Nonhuman primate breath volatile organic compounds associate with developmental programming and cardio-metabolic status Journal of Breath Research [Link]

  9. Sarnowski, C., Satizabal, C.L., DeCarli, C., Pitsillides, A.N., Cupples, L.A., Vasan, R.S., Wilson, J.G., Bis, J.C., Fornage, M., Beiser, A.S. and DeStefano, A.L., …, TOPMed Neurocognitive Working Group (Misra, B.B.,) 2017. Whole genome sequence analyses of brain imaging measures in the Framingham Study. Neurology [Link]

  10. Laskar, F., Purkayastha, S.D., Sen, A., Bhattacharya, M.K., Misra, B.B., 2017. Diversity of methanogenic archaea in freshwater sediments of lacustrine ecosystems. Journal of Basic Microbiology Review Article [Link]

  11. Geng, S., Misra, B.B., et. al. 2016. Jasmonate-mediated stomatal closure under elevated CO2 revealed by time-resolved metabolomics. Plant Journal [Link]

  12. Mostafa, I., Zhu, N., Yoo, M.J., Balmant, K.M., Misra, B.B., et.al. 2016. New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 glucosinolate mutants. Journal of Proteomics. [Link]

  13. Soltis, D., Misra, B.B., Shan, S.C., Chen, S., Soltis, P. 2016. Polyploidy and the Proteome. BBA-Proteins and Proteomics. Invited Review Article [Link]

  14. Parida, B. P., & Misra, B.B., 2015. Is a plant’s ploidy status reflected in its metabolome? Postdoc Journal Review Article [Link]

  15. Parida, B.P., & Misra, B.B., 2015. The plant subcellular metabolome: Current state and advances. Postdoc Journal Review Article [Link]

  16. Pal, A., Misra, B.B., Das, S.S., Gauri, S.S., Patra, M. & Dey, S.* 2013. Antidiabetic effect of Cephalandra indica Q in diabetic rats, Indian Journal of Research in Homoeopathy [Link]

  17. Das, S.S., Gauri, S.S., Misra, B.B., Biswas, M., & Dey, S. 2013. Purification and characterization of a betanidin glucosyltransferase from Amaranthus tricolor L. catalyzing non-specific biotransformation of flavonoids. Plant Science [Link]

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